Thursday, 24 November 2016

Membrane Lipids & Proteins

For a start, what is a cell membrane? Cell membrane is the barrier and exchange between the cell and its environment.


For most of us, when we mention cell membrane, we only remember specifically the plasma membrane. We must not forget that internal membranes are also present inside the cell. Examples of internal membranes are: Golgi apparatus and endoplasmic reticulum.

The most important feature of the cell membrane is the lipid bilayer structure, formed mainly by phospholipids. The figure below shows the fluid mosaic model of a cell membrane structure, with all the membrane contents, which will be talked about later on.
Membrane contents

Membrane contents
Carbohydrates
Lipids
Proteins
-       Glycoproteins
-       Glycolipids
4 types:
-       Phospholipids
-       Steroids
-       Neutral fats
-       Glycolipid
-       Intergral
o   Single span
o   Multiple span
-       Peripheral
o   Exofacial
o   Endofacial
Function wise:
ü  Anchoring
ü  Receptor-transducer function

The table above shows a basic summary of the chemical contents that form up the cell membrane. But in detail…

Carbohydrates
There are various carbohydrate chains which will be attached to different structures on the cell membrane. If the carbohydrate chain is attached to a protein, is it a Glycoprotein.
If the carbohydrate chain is attached to a lipid, it is a Glycolipid.

Lipids
The most important lipid is the Phospholipid. Structure is as shown below:
We can see that there is a polar head, which confers its hydrophilic (dissolves in water) characteristic, and there are 2 fatty acid chains attached to it, which is hydrophobic. The hydrophilic polar head and hydrophobic lipid tails gives phospholipids its AMPHIPATHIC nature.
Lipids can be saturated (C-C) or unsaturated (C=C), as shown in the picture above. This is an important feature, as the degree of unsaturation affects the quality of the cell membrane.
For example, decrease in unsaturation means more C-C. The lipid chains are more ‘straight’, which increases rigidity with decreased packing of chain. This effectively decreases the mobility of the phospholipid, and on a whole, makes the cell membrane more rigid. Cell membranes which are more rigid, are less capable in withstanding physical pressures.
Phospholipids spontaneously form bilayers in aqueous solutions, and this process stabilises the membrane structure. This is because, the polar heads will form polar attractions with each other, while there is tail-tail interaction between the hydrophobic tails.

Steroids refers to cholesterol and its esters. They are also amphipathic, but they have relatively large C-H portion.

Neutral fats mainly refers to glycerides, and Glycolipids (as mentioned before), are lipids with carbohydrate chains attached to them.

Proteins
Structure wise, membrane proteins are classified as integral (transmembrane) and peripheral. The integral membrane passes through the cell membrane, and they can be single span or multiple span. Single span passes through the membrane once, while multiple membrane passes through the membrane multiple times.
Whereas for peripheral proteins, it stays attached to the membrane surface and does not pass through the cell membrane. Peripheral proteins can be either endofacial (on the inner membrane) or exofacial (on the outer membrane).

Function wise, different structures of membrane proteins have different kinds of structures. Multiple spanning transmembrane proteins usually form a “pore” in the cell membrane to allow transport of certain ions or molecules in and out of the cell. Single spanning proteins may act as anchoring for other proteins, or they have Receptor-transducer function.
Exofacial peripheral proteins usually act as antigens for recognition by immune cells. The endofacial peripheral proteins can be enzymes that act as one of the downstream messengers when a receptor on the cell membrane gets activated.

Amino acid residues in proteins
Amino acids are the basic building blocks of proteins. The various amino acids have a different charge, depending on what their side chain is. There are 3 main types of amino acid residues in proteins:
I.               Neutral: no charge
II.             Cationic: Basic (positively charged)
III.           Anionic: Acidic (negatively charged)

A neutral amino acid can be Zwitterionic. Zwitterionic means the molecules have both separate groups of positively charged and negatively charged side chains.
Examples of basic amino acids would be Arginine and Lysine, and examples of acidic anionic side chains would be glutamate and aspartate.

Protein electrical charge distribution
Electrical charge distribution along a protein varies, and it is dependent on the primary structure of protein.
Regions of high charge density (presence of a lot of +/- residue) are relatively, hydrophilic. This is usually found on the cell membrane surface, where the polar heads are.
Regions of low charge density will be relatively hydrophobic, which is inside the cell membrane, where the lipid tails are.

Using that principle, we can use a hydropathy plot to find out the structure of a certain transmembrane protein. Referring to the example below…
Hydropathy plots are done by plotting the mean hydrophobicity against the amino acid sequence of the protein. The higher the hydrophobic point, the more it suggests that the protein is inside the core of the cell membrane. Thus, we can predict the number of times a protein passes through a cell membrane, giving us an idea of the protein structure.

So that is the main bulk on the structure and feature of how the cell membrane act as a barrier. In the next post, I will talk about how the cell membrane acts as an exchange for ions and molecules in greater details.

Preview:
The 3 different kinds of mechanism by which solutes are transported through the membrane: diffusion, osmosis and transport.